Note: For miscellaneous code snippets and tips please see the Scripts and Tricks
page of the NISOx website.
Professor Thomas Nichols and the NISOx group have contributed towards the development of two neuroimaging software analysis programs, FSL & SPM.
In addition Prof. Thomas Nichols also has created and contributed towards several distinct add-on toolboxes. These include the following:
The component of FSL that provides nonparametric permutation-based inference.
A toolbox for SPM provides nonparametric permutation-based inference.
A toolbox or SPM that provides assumption-checking and data exploration tools.
A toolbox for variance decomposition of 4D data sets in order to diagnose spatio-temporal corruptions.
A more powerful approach to multiple testing (was an extension, now integrated into SPM).
An SPM extension for longitudinal and repeated measures data.
A toolbox implementing fast and powerful genome wide association analysis of dense genetic data with high dimensional imaging phenotypes.
A toolbox for Heritability Inference for Related Subjects Based on Neuroimaging Phenotypes.
A toolbox implementing the Bayesian Spatial Generalised Linear Mixed Model.
A toolbox implementing the Bayesian Hierarchical Poisson Gamma Model.
A toolbox implementation of Bayesian Hierarchical Independent Cox Processes.
A tool for fast heritability inference.
In addition, for extra code excerpts, snippets and tips, please refer to the NISOx blog and the Scripts and Tricks section of the NISOx website.